[gmx-users] how much ns-one more question

[Marc F. Lensink]

On Thu, Nov 06, 2008 at 04:13:04PM +0530, Bhawana Gupta wrote:
> thanks for reply.
> but sir, when i start it with 1ns md simulation,my peptide doesnot get
> stable because it was moving in zigzag like motion.
> so should i go for 5 ns or not.
> which ns means (1ns or 2ns.......20ns) is better so that i can get good
> results.

I suggest you read a bit of literature to see what other people in the
field of protein simulation typically do.

cheers,
marc