[gmx-users] Mean squared displacement for fast moving particles

ROHIT MALSHE malshe at wisc.edu
Thu Nov 6 17:29:30 CET 2008

Hi all !

I want to calculate Mean squared displacement of fast moving particles from a gromacs trajectory. The way I will define fast moving particles is choice based, lets say particles which have possess velocities 2 standard deviations above the mean velocities at a given temperature. Does any one know how should I proceed ? 

I have the topology, and trajectories already generated. 

Rohit Malshe

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