[gmx-users] rmsd on homologous protein structure
nushki at mail.ru
Fri Nov 7 00:08:15 CET 2008
i want to calculate rmsd on homologous protein structures that have different residue numbers.
As far as i understood g_rms gives only rmsd of the same structure in different configurations, but it doesn't fit homologous protein structures?
In Option -f2 can i provide a trajectory of a homologous protein structure of it also have to be a reserence structure trajectory (which is provided in -s)?
many many thanks
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