[gmx-users] mdp file

Mark Abraham Mark.Abraham at anu.edu.au
Fri Nov 7 18:22:05 CET 2008


He, Yang wrote:
> Hi Mark,
> 
> This is what I got when I use the command gmxcheck:
> 
> Checking file traj.trr
> trn version: GMX_trn_file (single precision)
> Reading frame       0 time    0.000
> # Atoms  34
> Last frame          1 time    0.100
> 
> 
> Item        #frames Timestep (ps)
> Step             2    0.1
> Time             2    0.1
> Lambda           2    0.1
> Coords           2    0.1
> Velocities       2    0.1
> Forces           0
> Box              2    0.1
> 
> Also, I have tried to increase  the value of nsteps to 10000, but no change happened still just the static figure.
> 
> I really got stuck about that.
> 
> Hope to get your further suggestions,

I think what I said last time covers it pretty well. You're crashing and 
I gave you a link to somewhere with some explanations and ideas. Fix that.

Mark



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