[gmx-users] Re: High frequency output slow down the simulation?

[xianghong qi]

The time difference is : for simulation with every 100ps output, 160ns/day;
for simulation with every 0.1ps output, It has been running for 4 days, only
wrote to 2300ps . I am not sure the local hard disk since I run my
simulation in some cluster.  Thanks.
-Xianghong Qi



On Sat, Nov 8, 2008 at 11:09 AM, Yang Ye <leafyoung at yahoo.com> wrote:

> More details please.
> Local hard disk?
> How much the time difference?
>
> YY
>
>
> On 11/8/08 12:41 PM, xianghong qi wrote:
>
>>  Hello, all:
>>  I compare the two simulations with different output frequency for .xtc
>> file in same machine. One with low frequency runs  much faster than the one
>> with high frequency. Is that reasonable? I think the frequency shouldn't
>> affect the simulation speed.   Anyone has idea about this situation?
>>  Thanks.  -Xianghong Qi
>> --
>> Some people make the world more special just by being in it.
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