[gmx-users] posre.itp

Bhawana Gupta bhawana.gupta2010 at gmail.com
Mon Nov 10 07:00:23 CET 2008

hello everyone,

Pls tell me from where i can get posre.itp means format of this file.
Here in one mail named topology, you had given solution for making pdb file
from one other than PRODRG i.e.
 Build a small one by hand in a text editor (making sure the density is
suitable and there won't be steric clashes across periodic boundaries),
replicate it with genbox, and equilibrate.

But sorry i didnot get it. So explain it by another way.

can we use PRODRG for making peptides with usual amino acid.
sorry i am asking u again about this.

with regards
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