[gmx-users] Calculating the time for existence of h-bond

vivek sharma viveksharma.iitb at gmail.com
Thu Nov 20 15:27:45 CET 2008

HI Mark,
thanks for your reply.....
I have gone through the g_hbond -h, and have plotted hbnum.xvg using -num,
which gives me the plot of the number of h_bonds with respect to time,
but       can I find out the duration of bond in percent of the whole
trajectory time ?
Please help me if there is such an option in the same.

With thanks,

2008/11/20 Mark Abraham <Mark.Abraham at anu.edu.au>

> vivek sharma wrote:
>> Hi All,
>> I am analyzing the h-bond information for a mdrun using g_hbond. Can I
>> know the % of  trajectory time for which a bond between particular residue
>> was existing?
>> If anybody have tried such option please suggest me a way to do so.
> Have you started with reading g_hbond -h?
> Mark
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