[gmx-users] steady

[Justin A. Lemkul]

shahrbanoo karbalaee wrote:
> Dear justin
> you are right .that file was distorted.I used -pbc without no jump.I
> need to use trjconv for minimized the  box .please advise me.
> 

What file?  What does it mean "without nojump"?  Why do you need to use trjconv? 
  If you're running MD, the first step is removal of periodicity.

I am unclear as to what you are doing.  If you can provide more procedural 
details (i.e. commands and explanations), maybe that will clear things up.

-Justin

-- 
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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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