[gmx-users] Gromacs 3.3.1. and 3.3.3

[minnale]

Hi Users, 
I have run protein system till 25ns in gromacs version 3.3.1 in dual processor system. Now I want to run new systems in cluster with gromacs version 3.3.3, in two cases the  protein system is same but difference in few residues, If run new system in cluster compare the results with already ran protein system, will it make any difference? 
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