[gmx-users] steady

shahrbanoo karbalaee shahrbanoo at gmail.com
Thu Oct 9 14:36:18 CEST 2008

Dear justin

 a) if  I want  to have the steady and hemogen for mix solvent  , do I
have to use this command (when I made genbox box 16.16.24 before
:editconf  -f conf.gro -bt dodecahedron -d 0.5 -o box.gro
b) I use trjconv -pbc mol  -ur compact and then minimize .when I see
the output this part in vmd or ngmx and around X-rotate.I will see
water in top and tfe in down box and another roatation the box is
seemed hemogen ous .is it correct?
about distortion ,my mean is"donot have periodicity and hemogenity"

thanks and appreiciate u


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