[gmx-users] density graph

hhhh huan scottiehuan at yahoo.com
Wed Oct 15 05:18:04 CEST 2008


Thanks Justin, 

I realized my mistake.

I get the kj/mol unit because i use g_energy command and select the density option.

thanks

--- On Wed, 10/15/08, Justin A. Lemkul <jalemkul at vt.edu> wrote:

> From: Justin A. Lemkul <jalemkul at vt.edu>
> Subject: Re: [gmx-users] density graph
> To: scottiehuan at yahoo.com, "Discussion list for GROMACS users" <gmx-users at gromacs.org>
> Date: Wednesday, October 15, 2008, 9:07 AM
> hhhh huan wrote:
> > Dear all gmx users and developers, 
> >  Is it correct that in gromacs energy (density graph),
> the y-axis is labelled    as kJ/mol, I am wonder it is not a
> density unit.
> 
> In the output that I have from g_density (v 3.3), the the
> .xvg file has the 
> y-axis labeled as:
> 
> yaxis  label "Density (kg/m\S3\N)"
> 
> ...which is a density unit.  Where are you seeing kJ/mol? 
> Which version of 
> Gromacs?  What command did you issue?
> 
> -Justin
> 
> > Thanks
> > 
> > 
> >       
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> -- 
> ========================================
> 
> Justin A. Lemkul
> Graduate Research Assistant
> Department of Biochemistry
> Virginia Tech
> Blacksburg, VA
> jalemkul[at]vt.edu | (540) 231-9080
> http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> 
> ========================================


      



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