[gmx-users] Problem building a new polymer using pdb2gmx ....(solved)

[David van der Spoel]

Alberto Sergio Garay wrote:
> Dear David
> 
> Thank you for your time and attention. Using your last advice I finally 
> could resolve the problem.
> 
> As you told me I generated the file xlateat.dat with zero in the first 
> line (on my working directory) and everything work properly.
> 
> I used:
> 
> pdb2gmx -f polymer.gro -p top -o polymer2.gro -ter
> 
> Thank you again.
> 
You still need to check and double check that your topology is OK 
though... Good luck.

-- 
David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se