[gmx-users] What is the block size in the -ee option of g_analyze

Berk Hess gmx3 at hotmail.com
Mon Oct 20 12:40:41 CEST 2008


Hi,

I does not use one block size, but a whole range.
You can see the block sizes in the output file errest.xvg
g_analyze -h gives you the help including a reference for the error estimate.

Berk



> Date: Mon, 20 Oct 2008 09:43:30 +0200
> From: hkhandel at memphys.sdu.dk
> To: gmx-users at gromacs.org
> Subject: [gmx-users] What is the block size in the -ee option of g_analyze
> 
> I was wondering how gromacs decides on the block size to be used when 
> using g_analyze to calculate block errors? There does not seem to be an 
> option where the user can set it ?
> 
> Thank you
> 
> -Himanshu
> 
> ----------------------------
> Himanshu Khandelia, PhD,
> Research Assistant Professor (Postdoc),
> MEMPHYS, Center for BioMembrane Physics: www.memphys.sdu.dk
> University of Southern Denmark (SDU)
> Campusvej 55, Odense M 5230, Denmark
> Phone: +45 6550 3510, +45 2398 7972
> Fax: +45 6550 4048
> email: hkhandel at memphys.sdu.dk, hkhandelia at gmail.com
> WWW: www.memphys.sdu.dk/~hkhandel
> -----------------------------
> 
> 
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