[gmx-users] rmsd calculation of helix only

[Justin A. Lemkul]

ravi sharma wrote:
> Hello everyone
> 
> is there any idea how can i calculate rmsd for a given helix or all 
> helix in a protein from a trejectory???
> 

Create an index group, specifying only the residues you care to analyze, and 
pass it to g_rms.

-Justin

> 
> -Ravi
> 
> 
> Ravi Datta Sharma
> Lecturer,
> Bioinformatics,
> Department of Microbiology,
> CCS Unversity,
> Meerut
>                                                          
> 
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-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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