[gmx-users] Fw: Normal mode analysis

Alexey Zeifman azeif at mail.ru
Mon Oct 27 05:28:34 CET 2008

How can I obtain normal frequencies and normal modes? How are normal frequencies and normal modes connected with eigenvalues and eigenvectors? Calculation of the system of 3000 atoms with g_nmeig gives 3000 eigenvectors which consists of 3000 coords instead of 9000*9000, why? 

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