[gmx-users] Bonds missing in VMD visualization

Andreas Kring akring at fys.ku.dk
Mon Sep 1 15:45:30 CEST 2008


I have run an MD simulation of 1000 1,1,1-trichloroethane molecules and 
it all worked nicely. But when I try to visualize the trajectory file in 
VMD some of the C-Cl bonds are missing (although all the atoms appear on 
the screen - only bonds are missing)?

Can I do anything to fix this?


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