[gmx-users] Parameters for DNA bases

[Jeff Woodford]

Hi all,

Forgive me if this is a stupid question, but:

I am attempting to simulate the interaction between a peptide and a DNA
strand using the OPLS/AA force field.  However the parameters for the DNA
bases don't appear to be included.  Where might I find these parameters
suitable for adapting to GROMACS?

 

Thanks in advance,

-Jeff

 

Jeffrey N. Woodford

Associate Professor of Chemistry

Eastern Oregon University

Tel: 541-962-3321

Fax: 541-962-3873

 

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