[gmx-users] Segmentation fault with gromacs 3.3.3

[Shmulik Elmakies]

Dear gmx-users,

In Red Hat Enterprise Linux ES release 4 (Nahant Update 4)
  Same problem as in debian.

When I ryn simple test:
*** glibc detected *** mdrun: realloc(): invalid next size: 0x082a20d0 ***

And when I run double test, here is the result;

Anyone could help?


selmakies at lc10:gmxtest.3.3.3> ./gmxtest.pl -verbose -double all
Testing angles1 . . . PASSED but check mdp file differences
Testing angles125 . . . PASSED but check mdp file differences
Testing bham . . . FAILED. Check files in bham
Testing bonds1 . . . PASSED but check mdp file differences
Testing bonds125 . . . PASSED but check mdp file differences
Testing dih1 . . . PASSED but check mdp file differences
Testing dih125 . . . PASSED but check mdp file differences
Testing g96angles1 . . . PASSED but check mdp file differences
Testing g96angles125 . . . PASSED but check mdp file differences
Testing g96bonds1 . . . PASSED but check mdp file differences
Testing g96bonds125 . . . PASSED but check mdp file differences
Testing imp1 . . . PASSED but check mdp file differences
Testing imp36 . . . PASSED but check mdp file differences
Testing morse . . . PASSED but check mdp file differences
Testing rb1 . . . *** glibc detected *** realloc(): invalid next size:
0x08292808 ***
sh: line 1: 20538 Aborted                 mdrun_d >mdrun.out 2>&1
FAILED. Check files in rb1
Testing rb125 . . . PASSED but check mdp file differences
2 out of 16 simple tests FAILED
Testing acetonitrilRF . . . PASSED but check mdp file differences
Testing aminoacids . . . FAILED. Check files in aminoacids
Testing argon . . . PASSED but check mdp file differences
Testing butane . . . PASSED but check mdp file differences
Testing dec+water . . . PASSED but check mdp file differences
Testing ethyleenglycol . . . PASSED but check mdp file differences
Testing fe_test . . . PASSED but check mdp file differences
Testing field . . . PASSED but check mdp file differences
Testing nacl . . . PASSED but check mdp file differences
Testing sw . . . PASSED but check mdp file differences
Testing tip4p . . . PASSED
Testing tip4pflex . . . PASSED but check mdp file differences
Testing urea . . . Illegal division by zero at ./gmxtest.pl line 63, <FIN>
line 1.

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