[gmx-users] g_energy

[ravi sharma]

Hi,
RMSD is your just deviation of backbone from native stare while RMS fluctuation shows the 
per atom deviation throughout simulation.


regards,

Ravi Datta Sharma  Lecturer,  Bioinformatics,
Department of Microbiology,
CCS Unversity,
Meerut
                                                          


--- On Sat, 6/9/08, Alessandro.Maiorana at roma2.infn.it <Alessandro.Maiorana at roma2.infn.it> wrote:
From: Alessandro.Maiorana at roma2.infn.it <Alessandro.Maiorana at roma2.infn.it>
Subject: [gmx-users] g_energy
To: gmx-users at gromacs.org
Date: Saturday, 6 September, 2008, 2:41 PM

Hi,

how does it count the drift in g_energy? What is the equation? What is the
difference among fluct. and RMSD? Thanks, see you soon.
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