[gmx-users] sn1 and sn2 chains of popc

[Justin A. Lemkul]

minnale wrote:
>  
> Hi all,
> may be this is very basic query
> I want to calculate order parameters of popc. I have found in archives 
> that make sn1.ndx(pamitoyl) and sn2.ndx(oleyl) of popc then feed these 
> files to g_order command. Can anyone tell me that why pamitoyl call as 
> sn1 and oleyl call as sn2?

It derives from the numbering of the carbons on the glycerol backbone.

-Justin

> Thanks for your help.
> 
> 
> 
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-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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