[gmx-users] installation problem: undefined symbols: _gmx_fft_(init_)3d_real

Ervasti, H. (Henri) Henri.Ervasti at dstioffice.nl
Mon Sep 8 16:34:14 CEST 2008


Dear all,

 

I would like to ask you help on an installation issue of GROMACS. When I
am running ''make'' after configuring GROMACS, I get the following
error:

/usr/libexec/gcc/i686-apple-darwin8/4.2.1/ld: undefined symbols: 

_gmx_fft_3d_real

_gmx_fft_init_3d_real

Collect2: ld returned 1 exit status

Make[3]: *** [mdrun] Error 1

Make[2]: *** [all-recursive] Error 1

Make[1]: *** [all] Error 2

Make: *** [all-recursive] Error 1

 

This clearly relates to the FFTW program I have already successfully
installed, but I don't see why this happens. Has anyone else confronted
this problem and solved it? I would appreciate any help! As additional
info, I use Intel Mac Core Duo machine and I have gcc 4.2 installed with
the XCode tools 2.5.

 

Greetings,

Henri Ervasti

------------------------------------------------------------------

Dr. Henri K. Ervasti

Dutch Separation Technology Institute (DSTI)

Stationsstraat 77, 3811 MH Amersfoort

The Netherlands

tel. +31 33 467 6241

mob. +31 6 2625 4987

e-mail Henri.Ervasti at dsti.nl

 

 

 

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