[gmx-users] regarding xpm2ps?

[Justin A. Lemkul]

minnale wrote:
>  
> 
> Thanks again Justin for your kind reply
> I have given command like this
> xpm2ps -f .xpm -o .eps -di .m2p
> then it showing the following error
> 
> Fatal error:
> Library file H_hbond.m2p not found in current dir nor in default 
> directories.
> (You can set the directories to search with the GMXLIB path variable)
> 
> Could please tell me how can I remedy this problem?

The error message is pretty explicit...does such a file exist?

-Justin

> Thanks alot
> 
> On Wed, 10 Sep 2008 Justin A.Lemkul wrote :
>  >
>  >
>  >minnale wrote:
>  >>I have issued the following command
>  >>xpm2s -f .xpm -o .eps
>  >>If I mention option -di with m2p it showed
>  >>
>  >>Fatal error:
>  >>Library file H_hbond.m2p not found in current dir nor in default 
> directories.
>  >>(You can set the directories to search with the GMXLIB path variable)
>  >>
>  >
>  >If you specify -di you need to give xpm2ps an actual .m2p file, an 
> example of which is online:
>  >
>  >http://www.gromacs.org/documentation/reference/online/m2p.html
>  >
>  >-Justin
>  >
>  >>Could tell me any suggestion
>  >>Thanks alot
>  >>
>  >>
>  >>On Wed, 10 Sep 2008 Justin A.Lemkul wrote :
>  >>  >
>  >>  >
>  >>  >minnale wrote:
>  >>  >>  I have converted .xpm (which generated from *g_hbond) to .eps 
> by using xpm2ps command, after finished the running of this command showed
>  >>  >>
>  >>  >>There are 1 matrices in .xpm
>  >>  >>Matrix 0 is 37501 x 1
>  >>  >>Auto tick spacing failed for X-axis, guessing 2
>  >>  >>Auto tick spacing for X-axis: major 2, minor 0.4
>  >>  >>Auto tick spacing failed for Y-axis, guessing 0
>  >>  >>Auto tick spacing for Y-axis: major 0, minor nan
>  >>  >>Set the x-size of the box to 0.011
>  >>  >>Set the y-size of the box to 0.011
>  >>  >>
>  >>  >>1.is it mean that set the box x and y sizes to 0.111 by using -bx 
> and -by options.
>  >>  >
>  >>  >You've got problems somewhere.  Did you specify an .m2p file with 
> -di?  What was your command line?
>  >>  >
>  >>  >>2.How can I execute this .eps for getting map?
>  >>  >
>  >>  >An .eps file can be opened by a number of programs - pretty much 
> anything that can read a PDF (at least, on Linux and Mac), or Gimp.
>  >>  >
>  >>  >-Justin
>  >>  >
>  >>  >>Could please suggest me
>  >>  >>Thanks in advance.
>  >>  >>
>  >>  >>
>  >>  >>
>  >>  >>578x38_banner2.gif 
> <http://adworks.rediff.com/cgi-bin/AdWorks/click.cgi/www.rediff.com/signature-default.htm/1050715198@Middle5/2606998_2599290/2602379/1?PARTNER=3&OAS_QUERY=null>
>  >>  >>
>  >>  >>
>  >>  
>  >>------------------------------------------------------------------------
>  >>  >>
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>  >>  >-- ========================================
>  >>  >
>  >>  >Justin A. Lemkul
>  >>  >Graduate Research Assistant
>  >>  >Department of Biochemistry
>  >>  >Virginia Tech
>  >>  >Blacksburg, VA
>  >>  >jalemkul[at]vt.edu | (540) 231-9080
>  >>  >http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>  >>  >
>  >>  >========================================
>  >>
>  >>
>  >>
>  >>578x38_banner2.gif 
> <http://adworks.rediff.com/cgi-bin/AdWorks/click.cgi/www.rediff.com/signature-default.htm/1050715198@Middle5/2606998_2599290/2602379/1?PARTNER=3&OAS_QUERY=null>
>  >>
>  >
>  >-- ========================================
>  >
>  >Justin A. Lemkul
>  >Graduate Research Assistant
>  >Department of Biochemistry
>  >Virginia Tech
>  >Blacksburg, VA
>  >jalemkul[at]vt.edu | (540) 231-9080
>  >http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
>  >
>  >========================================
> 
> 
> 
> 578x38_banner2.gif 
> <http://adworks.rediff.com/cgi-bin/AdWorks/click.cgi/www.rediff.com/signature-default.htm/1050715198@Middle5/2606998_2599290/2602379/1?PARTNER=3&OAS_QUERY=null>
> 
> 
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-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================