[gmx-users] extract protein and counter ions from trajectory

sarbani chattopadhyay sarbani_c84 at rediffmail.com
Fri Sep 12 13:12:45 CEST 2008


  
Hi everybody,
                    I want to know is there any way to extract the coordinates of both the protein and 
counterions from the trajectory while writing the "pdb" file ie. I don't want the water molecules 
but only the protein and the counter ions. 
 I did not see that option wile trying to generate the pdb files.

Is there any way of doing this?

Thanks in advance

Sarbani
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20080912/195bf47f/attachment.html>


More information about the gromacs.org_gmx-users mailing list