[gmx-users] to add counter ions based on potential

David van der Spoel spoel at xray.bmc.uu.se
Fri Sep 12 20:40:41 CEST 2008

Jochen Hub wrote:
> sarbani chattopadhyay wrote:
>> Hi everybody,
>>                     I want to add counter ions based on potential and not randomly.
>> I will be very grateful if anyone can guide me through the command "genion" for this.
> As far as I know, that has not been implemented yet. It is a good idea,
> though.

It has been implemented but it has been broken for more than five years 
now :(.
> Jochen
>> I tried with "-random no" but it didn't work.
>> Thanks in advance
>> Sarbani
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David van der Spoel, Ph.D., Professor of Biology
Molec. Biophys. group, Dept. of Cell & Molec. Biol., Uppsala University.
Box 596, 75124 Uppsala, Sweden. Phone:	+46184714205. Fax: +4618511755.
spoel at xray.bmc.uu.se	spoel at gromacs.org   http://folding.bmc.uu.se

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