[gmx-users] pdb_to_xvzr not working

[Justin A. Lemkul]

Morteza Khabiri wrote:
> Dear
> 
> I want make hole in my system. Because of this I oblige to use MSMS programm
> to calculate the surface of my protein. Before using MSMS we should change
> pdb file format to xyzr  file format. I should use pdb_to_xvzr to produce
> xvzr file. Unfortunately I couldn't run  pdb_to_xvzr. After running i
> faced with the following error:
> 
> ./pdb_to_xyzr: line 102: nawk: command not found
> 
> thats very nice of you if someone could help me how to active pdb_to_xyzr.
> I use chmod but it did not work.
> 

"nawk" is a Unix/Linux utility.  It looks like the program requires this tool to 
work, so you need to install it.  If it is installed, you will need to add its 
location to your $PATH.

-Justin

> Thanks alot
> 
> Morteza
> 
> 
> _______________________________________________
> gmx-users mailing list    gmx-users at gromacs.org
> http://www.gromacs.org/mailman/listinfo/gmx-users
> Please search the archive at http://www.gromacs.org/search before posting!
> Please don't post (un)subscribe requests to the list. Use the 
> www interface or send it to gmx-users-request at gromacs.org.
> Can't post? Read http://www.gromacs.org/mailing_lists/users.php
> 

-- 
========================================

Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================