[gmx-users] dna-protein complex simulation

prasun kumar prasun30 at gmail.com
Fri Sep 19 06:58:13 CEST 2008

Dear users,

I am trying to run a simulation of SNA-protein complex.
I have changed DA,DC,DT,DG to DADE,DCYT,DTHY,DGUA and all ' to *.
while running the PDB2GMX command, I am getting following error

*Program pdb2gmx, VERSION 3.3.2
Source code file: pdb2gmx.c, line: 421

Fatal error:
Atom P in residue THF 2 not found in rtp entry with 39 atoms
             while sorting atoms

but THF 2 atom is not present in my pdb file.How can I remove this error?

Thanx in advance

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