[gmx-users] Leaflet of Bilayer

Jochen Hub jhub at gwdg.de
Fri Sep 19 09:51:07 CEST 2008

minnale wrote:
> Hi all, 
>    I have extended popc bilayer(intial popc.pdb from Dr.Tielmen site) by using genbox command, I issued 
> genbox -cs popc128a.gro -o out.gro -box 9.2 9.2 6.9 it ran successfully with increase of popc and water molecules.
>  Now I want to visualise this out file in VMD in a way that in eachleaflet how many popc molecules and water residues are there, May be this is trivial query.
> Could you give me suggestion.

If you want to enlarge a membrane patch, use genconf. Not genbox!


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Dr. Jochen Hub
Max Planck Institute for Biophysical Chemistry
Computational biomolecular dynamics group
Am Fassberg 11
D-37077 Goettingen, Germany
Email: jhub[at]gwdg.de
Tel.: +49 (0)551 201-2312

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