[gmx-users] dna-protein simulation

prasun kumar prasun30 at gmail.com
Fri Sep 19 15:26:50 CEST 2008

Hello Tsjerk

I have solved that problem, now while running PDB2GMX command its giving
following error

C7 was not found in rtp file
so I just compared the atom type in rtp file for DTHY and corresponding pdb
file and replace C7 by C5M.
i used -ignh option also,still I am getting warning like
H1 is not found
H3 is not found

but the program is running its giving error while running GROMPP step.
can you please help me in removing this error
with regards
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