[gmx-users] Re:GROMACS sample procedure

xianghong qi xianghong001 at gmail.com
Fri Sep 19 16:58:51 CEST 2008


Great! Tsjerk. thanks.
-Xianghong Qi

On Fri, Sep 19, 2008 at 3:34 AM, Tsjerk Wassenaar <tsjerkw at gmail.com> wrote:

> Hi,
>
> The gromacs wiki (wiki.gromacs.org) also lists a number of tutorials,
> written from different perspectives. But it doesn't have this one yet :p
>
> http://nmr.chem.uu.nl/~tsjerk/course/md-tutorial/<http://nmr.chem.uu.nl/%7Etsjerk/course/md-tutorial/>
>
> Any feedback is appreciated :)
>
> Cheers,
>
> Tsjerk
>
>
> On 18 Sep 2008 10:13:29 -0000, minnale <minnale_gnos at rediffmail.com>
> wrote:
>>
>>
>>
>>
>>   Hi,
>>     Its good to chose Gromacs for running MDSimulations. Gromacs procedure
>> cocern many tutorials are available in the net just type " gromacs
>> tutorials" in google moreover check the gmx-archives regularly
>> for finding solutions corresponding queries.
>>
>> Good luck.
>>
>> > > I am new to GROMACS and have not tried any calculation using it. I
>> have
>> > > installed grmx on scientific linux. Can anyone help me find a sample
>> > > procedure of using GROMACS for molecular dynamics simulation (or even
>> for
>> > > simple energy calculation)? I am interested in doing research on
>> Molecular
>> > > Dynamics using GROMACS, but so far, I really dont have an idea where
>> to
>> > > start. I hope to hear your advise. Thank you very much
>> > >
>> > >
>> > > Christopher Ambe
>> > > MSU-Iligan Institute of Technology
>> > >
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>
>
>
> --
> Tsjerk A. Wassenaar, Ph.D.
> Junior UD (post-doc)
> Biomolecular NMR, Bijvoet Center
> Utrecht University
> Padualaan 8
> 3584 CH Utrecht
> The Netherlands
> P: +31-30-2539931
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