[gmx-users] Error in .gro after energy minimization

vivek sharma viveksharma.iitb at gmail.com
Wed Sep 24 11:01:39 CEST 2008


Hi there,
while running energy minimization using the steep integrator..
I am getting corrupted .gro file ...which is having irregularity in file
format.. Can anybody help me in figuring out the reason and how can I get
rid of this problem ?
I am not able to continue for further steps with this .gro file
Following is a part of the generated .gro file after energy minimization


 1545SOL     OW 6510   0.909   1.951   5.716
 1545SOL    HW1 6511   0.944   1.958   5.622
 1545SOL    HW2 6512   0.971   1.896   5.771
 1546S18   5.883
 1542SOL    H 2.021   6.086
 1546691   5.944
514   1.796   2.010   6.016
   2.705   5.788
 1543SOL     OW 6504   1.794   3.585   6.747
 1543SOL    HW1 6505   1.853   3.619   6.673
 1543SOL    HW2 6506   1.754   3.497   6.720
 1544SOL     OW 6507   1.243   3.597   6.688


With Thanks,
Vivek
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