[gmx-users] superimposing molecules

[Justin A. Lemkul]

vivek sharma wrote:
> hi All,
> My apologies for putting a question out of gromacs.
> I was trying to superimpose pdb entry of one molecule over other, I 
> tried it using PYMOL, CHIMERA and vmd ..they are simply opening one 
> molecule over other.
> Is there any specific function in any of the visualization tool, that 
> can solve my purpose...
> 

In Chimera: Tools --> Structure Comparison --> MatchMaker.  Documentation is at 
the Chimera site.

-Justin

> Thanks in advance..
> 
> Vivek
> 
> 
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-- 
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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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