[gmx-users] superimposing molecules

Justin A. Lemkul jalemkul at vt.edu
Tue Sep 30 15:23:52 CEST 2008

vivek sharma wrote:
> hi All,
> My apologies for putting a question out of gromacs.
> I was trying to superimpose pdb entry of one molecule over other, I 
> tried it using PYMOL, CHIMERA and vmd ..they are simply opening one 
> molecule over other.
> Is there any specific function in any of the visualization tool, that 
> can solve my purpose...

In Chimera: Tools --> Structure Comparison --> MatchMaker.  Documentation is at 
the Chimera site.


> Thanks in advance..
> Vivek
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Justin A. Lemkul
Graduate Research Assistant
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080


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