[gmx-users] Issues with my PDB file

Mark Abraham Mark.Abraham at anu.edu.au
Fri Apr 3 00:19:30 CEST 2009

Jacob Harvey wrote:
> Dear all,
> I appear to be having problems with my pdb file for gromacs. If someone 
> could help me out that would be awesome. I enter the following code to 
> run pdb2gmx:
> pdb2gmx -f test.pdb
> and then I select a force field. I have selected OPLS-AA/L all-atom 
> force field (2001 aminoacid dihedrals). Once I select the force field I 
> get the error
> "Fatal error:
> Residue '2' not found in residue topology database"



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