[gmx-users] Doubt regarding membrane protein in POPC bilayer

Pawan Kumar pawan.chinari at gmail.com
Tue Apr 7 10:37:52 CEST 2009

Respected Sir,

Thanks for your mail.
I will work on this.

Thanking you,

On 4/7/09, Mark Abraham <Mark.Abraham at anu.edu.au> wrote:
> Pawan Kumar wrote:
>> Hello Sir,
>> Can you please tell me how to couple ions with SOL ?
>> Is there any command in gromacs to do that ?
> You need to define a group with SOL and the ions in an index file. This is
> uses as input to grompp so that it can make sense of the same group name
> when used in the .mdp file. See
> http://wiki.gromacs.org/index.php/Index_File
> Mark
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