[gmx-users] the position_restraints

[Justin A. Lemkul]

He, Yang wrote:
> HI all users,
> 
> I want to define the position_restraints in the itp file but when I run it, it always show that
> 
> Segmentation fault (core dumped)
> 

You'll have to do better than "run it" - what do you mean, grompp? mdrun?

As written, your position restraints look OK, so I don't think the problem is 
related to that section, necessarily.  How have you deduced that this is where 
the problem lies?

Are you getting any other messages from (grompp? mdrun?) before the seg fault?

-Justin

> and I will list the part below:
> 
>  [position_restraints]
> ;ai funct fc
>   1    1    10000   10000   10000
>   2    1    10000   10000   10000
>   3    1    10000   10000   10000
>   4    1    10000   10000   10000
>   5    1    10000   10000   10000
>   6    1    10000   10000   10000
>   7    1    10000   10000   10000
>   8    1    10000   10000   10000
>   9    1    10000   10000   10000
>  10    1    10000   10000   10000
>  11    1    10000   10000   10000
>  12    1    10000   10000   10000
>  13    1    10000   10000   10000
>  14    1    10000   10000   10000
>  15    1    10000   10000   10000
>  16    1    10000   10000   10000
>  17    1    10000   10000   10000
>  18    1    10000   10000   10000
>  19    1    10000   10000   10000
>  20    1    10000   10000   10000
>  41    1    10000   10000   10000
>  42    1    10000   10000   10000
>  43    1    10000   10000   10000
>  44    1    10000   10000   10000
>  45    1    10000   10000   10000
>  46    1    10000   10000   10000
>  47    1    10000   10000   10000
>  48    1    10000   10000   10000
>  49    1    10000   10000   10000
>  50    1    10000   10000   10000
>  51    1    10000   10000   10000
>  52    1    10000   10000   10000
>  53    1    10000   10000   10000
>  54    1    10000   10000   10000
>  55    1    10000   10000   10000
>  56    1    10000   10000   10000
>  57    1    10000   10000   10000
>  58    1    10000   10000   10000
>  59    1    10000   10000   10000
>  60    1    10000   10000   10000
> 
> Can anyone of you tell me what is the problem for that?  Thank you very much in advance.
> 
> Yang
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-- 
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Justin A. Lemkul
Graduate Research Assistant
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

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