[gmx-users] g_hbond

Dmitry Lupyan dmitry.lupyan at mssm.edu
Sat Apr 18 01:15:49 CEST 2009

Dear GROMACS Users,

I'm trying to use g_hbond (v4.0.3) to analyze a simulation which was
generated with NAMD (trajectory was converted to .trr w/VMD).  The
g_hbond requires (i) a trajectory file, and (ii) a 'run input file'
(tpr/tpa/tpb).  How do i generate this tpr/tpa/tpb file? Is there any
way I can use a plain PDB file for this?


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