[gmx-users] RMSD of Aminoacids

Andy Torres torand2000 at gmail.com
Wed Apr 22 16:46:29 CEST 2009

Hi, I'm trying to compare two proteins with the same number of aminoacids
with g_confrms, and it works all right, but it gives me the RMSD of the hole
protein, and I need the distances (or deviations) of each aminoacid. I know
this data shoul be there, but I don't know how to get it (I've got the mean
structure of each protein, calculated with g_rmsf, but this data is not
fitted each other)
Hopping to be clear.
Thanks in advance

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