[gmx-users] g_sas

[Cheong Wee Loong, Daniel]

Dear all,

I am interested to calculate the hydrophobic and hydrophilic area of the surface of the protein layer I am simulating.  It looked like g_sas would be able to give me what I was looking for.  But I was wondering what the difference is between the calculation group and the output group.  In particular, what is the output group?  I tried looking in the manual and in the archives but I can't seem to find an answer to it.

Thanks.

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