[gmx-users] problem in making topology file for protein inlipid bilayer

nitu sharma sharmanitu35 at gmail.com
Thu Apr 23 12:34:26 CEST 2009

Dear Mark
Thanks for your consideration.
I am replying you again I think it will be more easy for u in understanding
my problem.

as u ask- how many atoms is------Protein A- 5244
                                                 Protein B- 4658
         And in one dmpc molecule there is 46 atoms  so in 128 it is 5888

> can u suggest me how it is helpful in making correct topology file.

As you wrote in your mail you should make two # ifdef POSRES section does it
means separatly before addind .itp file of Protein A and Protein B????????
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