[gmx-users] Removing water from sides of bilayer

krithika krishnaswamy krithika.bioinfo at gmail.com
Tue Jan 6 11:52:37 CET 2009


Am a new user to gromacs.how to add water to a bilayer.i tried adding water
to entire system and then removed water from sides using tcl script.But its
not working.

Is there anyway to build lipid layer by layer and add water or something can
be done with genconf,genbox command so that water will not enter middle
region of bilayer.Please provide me with a detailed procedure.

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