[gmx-users] MD simulating cyclic peptides including D-aminoacids
JLenz at zbh.uni-hamburg.de
Thu Jan 15 17:47:50 CET 2009
i want to do MD simulations of cyclic-peptides that include D-aminoacids.
I work with GROMACS 3.3.1 and want to use the AMBER FF ports.
Is it possible to simulate D-aminoacids without defining anything else ?
Will the torsions make problems or do I have to define somthing new ?
What do I have to take care about ?
Any help is much appreciated.
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