[gmx-users] MD simulating cyclic peptides including D-aminoacids

[Joern Lenz]

dear gmx-users,

i want to do MD simulations of cyclic-peptides that include D-aminoacids.

I work with GROMACS 3.3.1 and want to use the AMBER FF ports.

Is it possible to simulate D-aminoacids without defining anything else ?
Will the torsions make problems or do I have to define somthing new ?
What do I have to take care about ?

Any help is much appreciated.

Greetings,

Joern