[gmx-users] is there any Problem in V. 3.3.3?

Tsjerk Wassenaar tsjerkw at gmail.com
Fri Jan 16 20:51:50 CET 2009

Hi Bala,

My guess is you're running with position restraints on. Check the
manual. And while you're at it, google for "how to ask questions the
smart way".


On Fri, Jan 16, 2009 at 3:00 PM, bala ms <ms_baalaa at yahoo.co.in> wrote:
> Hi
>      I am new to Gromacs, I am using V3.3.3. I have run the MD simulation
> (using explicit solvent) for 1ns for my protein of interest and also the
> examples which has given in the Manual.
> I am getting same kind of graph for the both proteins by plotting CA vs
> time. The graph shows RMSD value lies in the range of 0.03-0.02. I dunno
> where i am missing or is there any problem in v. 3.3.3
> thanks
> Bala
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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