[gmx-users] Problem with 4.0.3

Stephen P. Molnar s.molnar at sbcglobal.net
Mon Jan 19 15:37:49 CET 2009


I have just downloaded and installed 4.0.3.  I received neither warning 
nor error during the process.  However when I attempt to run the gmxdemo 
I get:

Fatal error:
Library file F.dat not found in current dir nor in default directories

each successive step in demo gets a corresponding error message.  Yet 
the 'missing' files, e.g. FF.dat are in 
/sdb5/Applications/gromacs/share/gromacs/top

Here is what I put in my .bashrc file:

##########################################################
# This is the real configuration part. We save the Gromacs
# things in separate vars, so we can remove them later.
# If you move gromacs, change the next four line.
##########################################################
GMXBIN=/sdb5/Applications/gromacs/bin
GMXLDLIB=/sdb5/Applications/gromacs/lib
GMXMAN=/sdb5/Applications/gromacs/share/man
GMXDATA=/sdb5/Applications/gromacs/share
   
# NB: The variables already begin with ':' now, or are empty
LD_LIBRARY_PATH=${GMXLDLIB}${LD_LIBRARY_PATH}
PATH=${GMXBIN}${PATH}
MANPATH=${GMXMAN}${MANPATH}

# export should be separate, so /bin/sh understands it
export GMXBIN GMXLDLIB GMXMAN GMXDATA LD_LIBRARY_PATH PATH MANPATH

Obviously I've installed gromacs in a non-default location.  What 
modifications should I make, I presume to .cashrc, so that the necessary 
files will be found?

Thanks in advance.

--
Stephen P. Molnar, Ph.D.		Life is a fuzzy set
Foundation for Chemistry		Stochastic and multivariate
http://www.geocities.com/FoundationForChemistry




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