[gmx-users] temperature too high with reaction field
sam.moors at chem.kuleuven.be
sam.moors at chem.kuleuven.be
Wed Jan 21 17:51:02 CET 2009
Hi gmx users,
I'm trying to simulate a water box filled with TIP3P water.
With PME, everything seems OK.
However, when I switch to reaction field electrostatics,
the temperature in the output files is too high:
312K instead of 300K (the t_ref value for the whole system).
Maybe there is something wrong with my input paramters?
Below you find my .mdp file
Thanks,
Sam
integrator = md
dt = 0.002 ; ps !
nsteps = 20000
nstcomm = 1
nstxout = 500
nstvout = 0
nstlog = 500
nstenergy = 500
nstfout = 0
nstlist = 10
ns_type = grid
rlist = 1.2
coulombtype = Reaction-Field
epsilon_r = 1
epsilon_rf = 78
rcoulomb = 1.2
table-extension = 1
vdwtype = cutoff
rvdw = 1.2
fourierspacing = 0.19
fourier_nx = 0
fourier_ny = 0
fourier_nz = 0
pme_order = 4
ewald_rtol = 1e-5
optimize_fft = yes
; temperature coupling
Tcoupl = v-rescale
tau_t = 1.0
tcgrps = system
ref_t = 300
; Pressure coupling
Pcoupl = parrinello-rahman
tau_p = 1.0
compressibility = 4.5e-5
ref_p = 1.0
; Generate velocites
gen_vel = no
gen_temp = 300
gen_seed = 173529
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