[gmx-users] "No default proper Dih.type

varsha gautham varsha.gautham88 at gmail.com
Sat Jan 31 08:57:12 CET 2009


Dear all,

Am trying to do simulation of DPPC membrane.Am using ffgmx force
field,because other force fields doesnt have DPP residue,so got an error
saying "Residue DPP not in topology database.

So i generated topology file using pdb2gmx -ff gmx -f inp.pdb -o out.gro

now after few more steps i updated topology again to run grompp..

on grompp am getting an error saying

"ERROR 0 [file "topol.top", line 30026]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30027]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30066]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30067]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30106]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30107]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30146]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30147]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30186]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30187]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30226]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30227]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30266]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30267]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30306]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30307]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30346]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30347]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30386]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30387]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30426]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30427]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30466]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30467]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30506]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30507]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30546]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30547]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30586]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30587]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30626]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30627]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30666]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30667]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30706]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30707]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30746]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30747]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30786]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30787]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30826]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30827]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30866]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30867]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30906]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30907]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30946]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30947]:
  No default Proper Dih. types
ERROR 0 [file "topol.top", line 30986]:


Please help me out in this issue.Thanks in advance..

-krithika
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