[gmx-users] problem in simulation of dna-protein complex

[Tsjerk Wassenaar]

Hi Nitu,

Check the atoms and their order in the pdb and the rtp file and try to
find out which match and which miss.

>     C2    amber99_2     0.56770    25
>      O    amber99_41   -0.58810    26

I place my bet on this one.

Cheers,

Tsjerk

-- 
Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623