[gmx-users] Buffer overflow on Fedora 10

[Jussi Lehtola]

On Mon, 2009-07-06 at 11:37 +0100, Adam Huffman wrote:
> I've installed several debuginfo packages and when run via gdb the crash 
> doesn't occur...:
> 
> (gdb) r
> Starting program: /usr/bin/g_mdrun
> warning: "/usr/lib/debug/usr/lib64/atlas/libblas.so.3.0.debug": The 
> separate debug info file has no debug info
> warning: "/usr/lib/debug/usr/lib64/atlas/liblapack.so.3.0.debug": The 
> separate debug info file has no debug info
> [Thread debugging using libthread_db enabled]
> 
> then the usage message and

When I run
$ gdb g_mdrun
(gdb) r

I get 

(clip)
Program g_mdrun, VERSION 4.0.4
Source code file: ../../../src/gmxlib/gmxfio.c, line: 736

Can not open file:
topol.tpr
(clip)
Program exited with code 0377.


Instead of running
$ gdb g_mdrun [mdrun options]
(gdb) run
you need to run
$ gdb g_mdrun
(gdb) run [mdrun options]
-- 
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Jussi Lehtola, FM, Tohtorikoulutettava
Fysiikan laitos, Helsingin Yliopisto
jussi.lehtola at helsinki.fi, p. 191 50632
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Mr. Jussi Lehtola, M. Sc., Doctoral Student
Department of Physics, University of Helsinki, Finland
jussi.lehtola at helsinki.fi
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