[gmx-users] monomers

[Justin A. Lemkul]

Jarol E. Molina wrote:
> Dear Justin
> 
> Yes, I Built the .rtp but I can't get the bond between two monomers, I 
> built the files .tdb and I did not get it.
> 

Then you need to define special terminal units.  Perhaps this will be of some help:

http://lists.gromacs.org/pipermail/gmx-users/2009-March/040125.html

-Justin

> Tank you
> 
> 2009/7/13 Justin A. Lemkul <jalemkul at vt.edu <mailto:jalemkul at vt.edu>>
> 
> 
> 
>     Jarol E. Molina wrote:
> 
>         Hi all
> 
>         I need some monomers get bonds among them, but each one does not
>         have neither C nor N ends.
> 
>         Is there any suggestions?
> 
> 
>     Assuming that you are trying to create some sort of monomer, read
>     about .rtp files in the manual, and create the building blocks using
>     the existing .rtp file for your force field as a template.
> 
>     -Justin
> 
>         Thank you
>         -- 
>                      Jarol E Molina, I.Q., M.S.
>         Estudiante Doctorado en Ingeniería - Sistemas Energéticos
>         Universidad Nacional de Colombia - Sede Medellín
>         jemolina at unal.edu.co <mailto:jemolina at unal.edu.co>
>         <mailto:jemolina at unal.edu.co <mailto:jemolina at unal.edu.co>>
>         jemolina at unalmed.edu.co <mailto:jemolina at unalmed.edu.co>
>         <mailto:jemolina at unalmed.edu.co <mailto:jemolina at unalmed.edu.co>>
> 
> 
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> 
>     -- 
>     ========================================
> 
>     Justin A. Lemkul
>     Ph.D. Candidate
>     ICTAS Doctoral Scholar
>     Department of Biochemistry
>     Virginia Tech
>     Blacksburg, VA
>     jalemkul[at]vt.edu <http://vt.edu> | (540) 231-9080
>     http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin
> 
>     ========================================
> 
> 
> 
> 
> -- 
>               Jarol E Molina, I.Q., M.S.
> Estudiante Doctorado en Ingeniería - Sistemas Energéticos
> Universidad Nacional de Colombia - Sede Medellín
> jemolina at unal.edu.co <mailto:jemolina at unal.edu.co>
> jemolina at unalmed.edu.co <mailto:jemolina at unalmed.edu.co>
> 

-- 
========================================

Justin A. Lemkul
Ph.D. Candidate
ICTAS Doctoral Scholar
Department of Biochemistry
Virginia Tech
Blacksburg, VA
jalemkul[at]vt.edu | (540) 231-9080
http://www.bevanlab.biochem.vt.edu/Pages/Personal/justin

========================================