[gmx-users] about do_dssp

Tsjerk Wassenaar tsjerkw at gmail.com
Tue Jul 14 08:26:34 CEST 2009

Hi hazizian,

That information is stored in the file you get with the option -sc. To
get percentages you have to use awk or something along thos lines.



On Tue, Jul 14, 2009 at 5:47 AM, hazizian<hazizian at razi.tums.ac.ir> wrote:
> Hi
> I have a question about do_dssp program.is it posible to define the amount
> of residus (the percentage) which have specific secondry structure, apart
> from the graphic file? if yes what is the the command?
> Thanks
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> Tehran University of Medical Sciences
> www.tums.ac.ir
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Tsjerk A. Wassenaar, Ph.D.
Junior UD (post-doc)
Biomolecular NMR, Bijvoet Center
Utrecht University
Padualaan 8
3584 CH Utrecht
The Netherlands
P: +31-30-2539931
F: +31-30-2537623

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