[gmx-users] GridMatMD Result Interpretation

[Anirban Ghosh]

Hello Justin,

I have a query regarding the interpretation of the results of GridMatMD. In your paper you have given the eg. of KALP-DPPC simulation. The colour index (blue to red) ranges from 2.5 to 4.5. Its the distance between the P atoms of DPPC in the top and bottom layers i.e. the Z values. Right? The protein is represented in Blue. Can you briefly explain this plot. I mean what exactly is the significance of the variation in the colors from blue to red i.e. from 2.5 to 4.5?
Thanks a lot in advance.

Regards,
 

 Anirban GhoshGrade Based Engineer
Bioinformatics Team
Centre for Development of Advanced Computing (C-DAC)
Pune, India



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