[gmx-users] GridMatMD Result Interpretation

Anirban Ghosh anirbanz83 at yahoo.co.in
Tue Jul 14 15:58:51 CEST 2009

Hello Justin,

I have a query regarding the interpretation of the results of GridMatMD. In your paper you have given the eg. of KALP-DPPC simulation. The colour index (blue to red) ranges from 2.5 to 4.5. Its the distance between the P atoms of DPPC in the top and bottom layers i.e. the Z values. Right? The protein is represented in Blue. Can you briefly explain this plot. I mean what exactly is the significance of the variation in the colors from blue to red i.e. from 2.5 to 4.5?
Thanks a lot in advance.


 Anirban GhoshGrade Based Engineer
Bioinformatics Team
Centre for Development of Advanced Computing (C-DAC)
Pune, India

      See the Web's breaking stories, chosen by people like you. Check out Yahoo! Buzz. http://in.buzz.yahoo.com/
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://maillist.sys.kth.se/pipermail/gromacs.org_gmx-users/attachments/20090714/8483a6af/attachment.html>

More information about the gromacs.org_gmx-users mailing list