[gmx-users] a question about analysis

oguz gurbulak gurbulakoguz at yahoo.com
Mon Mar 2 17:26:03 CET 2009

Dear All,
I converted the mdcrd ( coordinates, box sizes ) and mdvel ( velocities )  Amber trajectory files for every md record into the pdb format using ptraj in Amber. Can I use these pdb files in Gromacs for performing analysis ? Or Will I need to have some extra files to use analysis programs of Gromacs ? I will only use g_msd , g_velacc , g_energy for calculating viscosity. I'm waiting for your advices.

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